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Highly sensitive and precise analytical methods or their combination already allow quantitative investigations of the metabolome – i.e. all metabolic products of an organism – at the cellular level. What is currently lacking, however, are analytical methods with which the metabolome can also be completely mapped with its spatial and temporal details. This spatial and temporal information is important in order to be able to detect pathological changes in cells, for example to analyse the cellular metabolic heterogeneity in heart diseases or tumours in order to understand their early development. Such a molecular analysis of highly dynamic metabolic processes and changes in tissue poses a great challenge for research.

The analysis with MALDI-2 (matrix sssisted laser sesorption/ionisation) provides massspetrometric imaging of lipids and metabolites as well as their spatial distribution with high analytical sensitivity.

© ISAS / Hannes Woidich

In 2021, ISAS established the junior research group Spatial Metabolomics. Over the following five years, the research group, funded by the Federal Ministry for Education and Research (Bundesministerium für Bildung und Forschung, BMBF), is going to develop a multi-method approach that will allow the parallel analysis of metabolic processes under spatial and temporal aspects. For this purpose, the team will combine two complementary analytical techniques such as mass spectrometry (MS) imaging and nuclear magnetic resonance (NMR) spectroscopy for their multi-omics analyses. The goal in the future is to enable new and improved treatments in precision medicine for cardiovascular diseases and cancer.

The Federal Ministry for Education and Research (Bundesministerium für Bildung und Forschung, BMBF) is funding the MSCoreSys-associated junior research group Spatial Metabolomics under the funding number 161L0271.

Highlights

Projects

Targeted & Non-Targeted Metabolomics

In the »Targeted & Non-Targeted Metabolomics« project, NMR spectroscopy is used for both targeted and non-targeted metabolome analyses.

3D Molecular Pathology

The aim of the work carried out by researchers in the »3D molecular pathology« project is to gain a better understanding of the influence of inflammatory cells on the course of diseases that trigger massive immune reactions.

Biochemical Annotations of Mass Spectrometry Imaging Data for Worldwide Exchange

The research groups AMBIOM and Spatial Metabolomics are working together to develop a plug-in for the multi-dimensional imaging software napari that makes it possible to visualise and biochemically annotate MSI data.

Creating 'Leibniz Mass Spectral Imaging Library' for Identification of Primary & Secondary Metabolites

The project aims at creating the first-ever open-access MSI library of over 1000 bioactive compound standards on different matrix-assisted laser desorption/ionization (MALDI) MSI platforms.

Multiomics: A systems biology approach for cardiovascular research

Current high-throughput methods for analysing proteins, nucleic acids, and metabolites are often limited to one molecule class only. This project aims to combine several omics techniques in a multimoics platform to investigate cardiovascular diseases.

Imaging of Large Tissues

Researchers on the »Imaging of Large Tissues« project are developing a workflow to combine the various microscopy imaging methods and analytical, mass spectroscopy methods.

Team

Dr. Prasad Phapale

Research Group Leader

Department: Bioanalytics

Research group: Spatial Metabolomics

Portrait von Dr. Prasad Phapale.

Philipp Bäuml

Engineer

Department: Bioanalytics

Research group: Spatial Metabolomics

Portrait von  Philipp Bäuml.

Antonia Fecke

Research Associate

Department: Bioanalytics

Research group: Spatial Metabolomics

Portrait von  Antonia Fecke.

Siva Swapna Kasarla

Research Associate

Department: Bioanalytics

Research group: Spatial Metabolomics

Portrait von  Siva Swapna Kasarla.

Dineesha Pichukala

Student Assistant

Department: Bioanalytics

Research group: Spatial Metabolomics

Dr. Nay Min Min Thaw Saw

Research Associate

Department: Bioanalytics

Research group: Spatial Metabolomics

Portrait von Dr. Nay Min Min Thaw Saw.

Dr. Karl William Smith

Research Associate

Department: Bioanalytics

Research group: Spatial Metabolomics

Portrait von Dr. Karl William Smith.